STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0121SN-glycerol-3-phosphate transport ATP-binding protein (ugpC); Similar to SP:P10907 GB:U00039 PID:43249 PID:912455 GB:U00096 percent identity: 32.54; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (261 aa)    
Predicted Functional Partners:
MJ_0120
Urease accessory protein (ureG); Similar to GB:L24101 SP:P42871 PID:431755 percent identity: 34.53; identified by sequence similarity; putative.
  
 0.999
MJ_0119
Carbon monoxide dehydrogenase gamma subunit (cdhE) isolog; Similar to PID:1002692 SP:Q50539 percent identity: 42.86; identified by sequence similarity; putative.
 
    0.997
comA
Conserved hypothetical protein; Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL).
  
    0.974
hypB
Hydrogenase expression/formation protein (hypB); Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. Exhibits a low intrinsic GTPase activity, which is essential for nickel insertion; Belongs to the SIMIBI class G3E GTPase family. HypB/HupM subfamily.
  
  
 0.844
MJ_0797
Hypothetical protein; Similar to PID:1653948 percent identity: 28.10; identified by sequence similarity; putative.
  
 
 0.784
MJ_1507
Hypothetical protein; Similar to PID:1653948 percent identity: 32.05; identified by sequence similarity; putative.
  
 
 0.784
MJ_0687
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 40.25; identified by sequence similarity; putative.
   
 
 0.720
MJ_1681
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 46.61; identified by sequence similarity; putative.
       0.658
thrC
Threonine synthase (thrC); Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.575
MJ_0123
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0123; To M.jannaschii MJ1213 and A.aeolicus AA15.
   
   0.401
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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