STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0147Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0147; Belongs to the archaeal ATPase family. (371 aa)    
Predicted Functional Partners:
truB
Centromere/microtubule-binding protein (cbf5); Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.
       0.773
MJ_0149
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0149.
       0.773
MJ_0150
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0150; Belongs to the M.jannaschii MJ0150/MJ0739/MJ0745/MJ1460/MJ1642 family.
       0.556
ptr1
Transcriptional regulator, putative; Participates in positive as well as negative regulation of transcription. Binds to its own promoter.
       0.556
MJ_0146
2-ketoglutarate ferredoxin oxidoreductase, subunit delta (korD); Similar to GB:M63654 SP:P23481 PID:147018 GB:U00096 PID:1788826 percent identity: 36.92; identified by sequence similarity; putative.
       0.424
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.