STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0366Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ0366. (92 aa)    
Predicted Functional Partners:
MJ_0367
Integrase/recombinase; Similar to PID:557887 percent identity: 30.80; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
  
    0.938
MJ_0336
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0336.
      
 0.878
MJ_0363
Cell division control protein 21 (cdc21); Similar to SP:P29458 percent identity: 29.92; identified by sequence similarity; putative; Belongs to the MCM family.
  
    0.792
MJ_0365
Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ0365.
       0.778
MJ_0364
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0364.
       0.773
tfs
Transcription-associated protein ('TFIIS'); Induces RNA cleavage activity in the RNA polymerase. In its presence, the cleavage activity of the RNA polymerase truncates the RNA back to position +15 in a stepwise manner by releasing mainly dinucleotides from the 3'-end of the nascent RNA. The truncated RNAs are able to continue elongation. Involved in transcriptional proofreading and fidelity. Misincorporation of nucleotides during elongation of transcription leads to arrested elongation complexes which are rescued by TFS-promoted removal of a dinucleotide from the 3'-end. TFS is able to [...]
      
 0.766
MJ_0362
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0362.
  
    0.747
MJ_0361
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0361.
       0.504
MJ_0368
Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ0368.
       0.410
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.