Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
MJ_0414Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 43.28; identified by sequence similarity; putative. (395 aa)    
Predicted Functional Partners:
MJ_0950
Conserved hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.890
MJ_1225
Conserved hypothetical protein; Similar to SP:P15889 PID:48226 percent identity: 23.19; identified by sequence similarity; putative.
       0.685
MJ_0325
Translation factor EF-1 alpha, putative; Similar to SP:P19486 GB:X53866 PID:48119 percent identity: 31.40; identified by sequence similarity; putative.
       0.674
MJ_0416
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0416.
 
     0.576
rpl10e
Ubiquinol-cytochrome C reductase complex, subunitVI requiring protein; Similar to GB:Z15157 SP:Q08770 PID:17584 PID:17682 PID:576963 percent identity: 43.90; identified by sequence similarity; putative; Belongs to the universal ribosomal protein uL16 family.
       0.575
MJ_0413
Nitrate transporter protein (nrtB) homolog (cmpB); Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.562
MJ_0412
Nitrate transporter protein (nrtC) homolog (cmpC); Similar to PID:1019380 percent identity: 47.43; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.561
pol
DNA polymerase B1; Similar to GB:D29671 PID:473967 PID:1620911 percent identity: 46.87; identified by sequence similarity; putative; Belongs to the DNA polymerase type-B family.
 
    0.557
MJ_0415
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0415.
       0.552
lig
DNA ligase (lig); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
      
 0.493
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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