STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0548Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 31.00; identified by sequence similarity; putative. (293 aa)    
Predicted Functional Partners:
mtrA
N5-methyl-tetrahydromethanopterin:coenzyme M methyltransferase, subunit A (mtrA); Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step; Belongs to the MtrA family.
    
 
 0.986
MJ_0547
Cell division inhibitor minD; Similar to GB:M95582 SP:Q01464 GB:M96343 PID:142859 PID:143216 percent identity: 36.26; identified by sequence similarity; putative; Belongs to the ParA family. MinD subfamily.
       0.889
MJ_0546
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0546.
       0.878
MJ_0544
Dolichyl-phosphate mannose synthase; Similar to GP:1150648 percent identity: 34.09; identified by sequence similarity; putative.
       0.786
MJ_0549
Conserved hypothetical protein; Transcriptional regulator.
       0.766
MJ_0545
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0545.
       0.763
psmB
Proteasome, subunit beta (psmB); Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. The M.jannaschii proteasome is able to cleave oligopeptides after Glu, Asp, Tyr, Phe, Trp, slightly after Arg, but not after Ala. Thus, displays caspase-like and chymotrypsin-like activities and low level of trypsin- like activity.
     
 0.677
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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