STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0624Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons probably in the CO-dehydrogenase complex. (58 aa)    
Predicted Functional Partners:
MJ_0623
Conserved hypothetical protein; Similar to GP:1673676 percent identity: 33.33; identified by sequence similarity; putative; Belongs to the metallophosphoesterase superfamily. YfcE family.
       0.907
purO
Conserved hypothetical protein; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP; Belongs to the archaeal IMP cyclohydrolase family.
       0.815
MJ_0625
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0625; Belongs to the archaeal ATPase family.
       0.615
MJ_1488
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1488.
 
     0.501
MJ_0627
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0627.
       0.406
MJ_0628
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0628; To M.jannaschii MJ0992.
       0.406
MJ_0629
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 29.21; identified by sequence similarity; putative; Belongs to the UPF0111 family.
       0.405
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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