STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0649NADH oxidase (nox); Catalyzes the four-electron reduction of molecular oxygen to water. (463 aa)    
Predicted Functional Partners:
MJ_0551
Nitrite reductase (nirA) isolog; Similar to PID:1113082 percent identity: 32.84; identified by sequence similarity; putative; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 0.929
MJ_0534
Flavoprotein (fprA); Similar to PID:687617 percent identity: 34.10; identified by sequence similarity; putative.
    
 0.917
fprA
Flavoprotein (fpaA); Probably functions as an electron acceptor for a hydrogenase; however there is an uncharacterized intermediate between the hydrogenase and flavoprotein A; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family.
    
 0.914
MJ_0006
Formate dehydrogenase, alpha subunit; Similar to GB:J02581 SP:P06131 PID:149708 percent identity: 41.56; identified by sequence similarity; putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.913
MJ_0732
Flavoprotein (fprA); Similar to PID:687617 percent identity: 40.62; identified by sequence similarity; putative.
    
 0.910
MJ_0636
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative.
 
 
 0.815
MJ_0650
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0650.
       0.773
rps5
SSU ribosomal protein S5P (rpsE); With S4 and S12 plays an important role in translational accuracy.
  
 
 0.749
MJ_0296
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0296.
   
 0.725
MJ_0888
Conserved hypothetical protein; Similar to SP:P54501 PID:1303871 GB:AL009126 percent identity: 28.66; identified by sequence similarity; putative.
   
 0.725
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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