STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ0652Probable RNA-binding protein MJ0652; Similar to SP:P54454 PID:1303790 GB:AL009126 percent identity: 44.71; identified by sequence similarity; putative (134 aa)    
Predicted Functional Partners:
MJ0651
Putative protease MJ0651; Similar to GB:L42023 SP:P45243 PID:1007737 PID:1221687 PID:1205776 percent identity: 34.91; identified by sequence similarity; putative; Belongs to the peptidase S49 family
       0.833
MJ0690
Uncharacterized protein MJ0690; Similar to GB:AE000666 percent identity: 48.73; identified by sequence similarity; putative
 
     0.635
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends
 
     0.631
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
     
 0.601
eif6
Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex
       0.565
rpl31e
50S ribosomal protein L31e; Similar to SP:P04649 PID:1431090 PID:4390 PID:625117 PID:625117 percent identity: 42.25; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL31 family
       0.565
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of pseudouridine at position 914 (Psi914) in 16S rRNA. Is not able to methylate uridine at this position
       0.565
rplX
50S ribosomal protein L18Ae; Similar to GB:X77509 SP:P38613 PID:453441 percent identity: 38.89; identified by sequence similarity; putative
       0.565
rpl39e
50S ribosomal protein L39e; Similar to SP:P13005 GB:X77509 PID:453438 percent identity: 52.94; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL39 family
       0.565
MJ0691
DNA-binding protein MJ0691; Similar to GP:1523895 percent identity: 37.36; identified by sequence similarity; putative; Belongs to the PDCD5 family
       0.565
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii DSM2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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