STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0653Inosine-5'-monophosphate dehydrogenase (guaB); Similar to PID:1002715 SP:P50100 percent identity: 41.42; identified by sequence similarity; putative. (194 aa)    
Predicted Functional Partners:
MJ_1225
Conserved hypothetical protein; Similar to SP:P15889 PID:48226 percent identity: 23.19; identified by sequence similarity; putative.
 
   
0.946
tmk
Thymidylate kinase (tmk); Similar to SP:P36590 percent identity: 31.18; identified by sequence similarity; putative.
     
 0.829
MJ_1404
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1404.
 
   
0.807
MJ_0636
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative.
  
 
 0.789
MJ_0920
GTP-binding protein homologue (yphC); Similar to PID:1146219 SP:P50743 GB:AL009126 percent identity: 26.99; identified by sequence similarity; putative.
  
 0.563
guaAB
GMP synthase (guaA); Catalyzes the synthesis of GMP from XMP.
  
 
 0.406
MJ_0047
Putative mRNA 3'-end processing factor 1; Similar to GP:1707412 percent identity: 30.64; identified by sequence similarity; putative; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family.
  
 
 0.402
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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