Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MJ_0687Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 40.25; identified by sequence similarity; putative. (335 aa)    
Predicted Functional Partners:
MJ_0121
SN-glycerol-3-phosphate transport ATP-binding protein (ugpC); Similar to SP:P10907 GB:U00039 PID:43249 PID:912455 GB:U00096 percent identity: 32.54; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
   
 
 0.720
MJ_0796
ABC transporter, ATP-binding protein; Similar to SP:P10346 PID:581098 GB:U00096 PID:1651363 PID:1651364 percent identity: 47.83; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
   
 
 0.720
MJ_1508
ABC transporter, probable ATP-binding subunit; Similar to GB:L42023 SP:P45247 PID:1007753 PID:1221696 PID:1205784 percent identity: 43.89; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
   
 
 0.720
MJ_1396
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1396.
 
   
 0.682
MJ_0686
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0686.
       0.590
MJ_0688
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 36.79; identified by sequence similarity; putative; Belongs to the UPF0146 family.
       0.546
MJ_0867
Conserved hypothetical protein; Catalyzes the methylthiolation of N6- threonylcarbamoyladenosine (t(6)A), leading to the formation of 2- methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine.
     
 0.499
MJ_1536
Thioredoxin reductase (trxB); Similar to GB:U02197 GB:L43967 SP:P47348 PID:1045780 percent identity: 38.93; identified by sequence similarity; putative.
 
    0.496
MJ_1562
Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1562.
  
  
 0.435
serS
seryl-tRNA synthetase (serS); Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
  
 0.425
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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