Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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MJ_0735Rubredoxin 1 (rd1); Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule (By similarity). (80 aa)    
Predicted Functional Partners:
MJ_0734
Rubrerythrin (rr); May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide.
  
  
 0.810
MJ_0741
Desulfoferrodoxin, putative (rbo); Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide.
  
  
 0.808
MJ_0736
Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.766
MJ_0733
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0733.
  
    0.738
MJ_0738
Conserved hypothetical protein; Similar to GB:X69112 PID:44585 GB:AE000666 percent identity: 41.82; identified by sequence similarity; putative.
  
    0.670
MJ_0732
Flavoprotein (fprA); Similar to PID:687617 percent identity: 40.62; identified by sequence similarity; putative.
 
  
 0.615
MJ_0737
Rubredoxin-like non-heme iron protein; Similar to SP:P19500 percent identity: 32.56; identified by sequence similarity; putative.
       0.537
MJ_0279
4-hydroxybenzoate octaprenyltransferase (ubiA); Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
     
 0.528
MJ_0566
Ferrous iron transport protein B (feoB); Probable transporter of a GTP-driven Fe(2+) uptake system, might be able to transport Fe(2+) into or out of the cell (Probable). Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
     
 0.479
MJ_0730
DNA/pantothenate metabolism flavoprotein-like; Similar to GB:L10328 SP:P24285 PID:290489 GB:U00096 PID:1790070 percent identity: 31.20; identified by sequence similarity; putative; To M.jannaschii MJ0208.
     
 0.427
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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