STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0781Type II secretion system protein; Similar to GP:1707774 percent identity: 37.14; identified by sequence similarity; putative; Belongs to the GSP E family. (721 aa)    
Predicted Functional Partners:
argB
Acetylglutamate kinase (argB); Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
     
 0.876
MJ_0780
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0780.
  
  
 0.869
MJ_0779
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 23.56; identified by sequence similarity; putative.
  
  
 0.847
tfb
Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
  
  
 0.768
MJ_0782.1
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 48.08; identified by sequence similarity; putative; To M.thermoautotrophicum MTH886.
  
    0.693
MJ_1286
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 26.90; identified by sequence similarity; putative.
 
  
 0.639
MJ_0835
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0835.
     
 0.594
flaJ
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 28.40; identified by sequence similarity; putative; To M.jannaschii MJ1286.
 
  
 0.532
flaH
Flagella-related protein H, putative; Similar to GP:2104780 percent identity: 67.39; identified by sequence similarity; putative.
 
  
 0.509
MJ_1464
Hypothetical GTP-binding protein (SP:P40010); Similar to SP:P40010 PID:603598 percent identity: 34.59; identified by sequence similarity; putative; Belongs to the TRAFAC class YlqF/YawG GTPase family.
       0.502
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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