STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0790NADH dehydrogenase, subunit 1 isolog; Similar to GP:1236426 percent identity: 31.29; identified by sequence similarity; putative. (229 aa)    
Predicted Functional Partners:
sla
S-layer structural protein; S-layer protein. The S-layer is a paracrystalline mono- layered assembly of proteins which coat the surface of the cell. Belongs to the Mj S-layer protein family.
      
 0.894
rps5
SSU ribosomal protein S5P (rpsE); With S4 and S12 plays an important role in translational accuracy.
      
 0.684
MJ_0789
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0789.
       0.664
MJ_1536
Thioredoxin reductase (trxB); Similar to GB:U02197 GB:L43967 SP:P47348 PID:1045780 percent identity: 38.93; identified by sequence similarity; putative.
     
 0.582
MJ_0787
Conserved hypothetical protein; Similar to PID:726081 percent identity: 47.77; identified by sequence similarity; putative; To M.thermoautotrophicum MTH1137.
  
    0.503
MJ_0563
Modification methylase, type II R/M system; Similar to SP:P50192 percent identity: 35.29; identified by sequence similarity; putative.
   
    0.497
MJ_1200
Modification methylase, type II R/M system; Similar to SP:P05302 percent identity: 40.20; identified by sequence similarity; putative.
   
    0.497
MJ_0788
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0788.
       0.488
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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