STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0858Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 31.82; identified by sequence similarity; putative. (113 aa)    
Predicted Functional Partners:
MJ_0856
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 27.81; identified by sequence similarity; putative.
  
    0.977
MJ_0859
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0859.
       0.921
MJ_1404
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1404.
  
    0.830
idsA
Bifunctional short chain isoprenyl diphosphate synthase (idsA); Similar to PID:913252 SP:Q53479 percent identity: 48.47; identified by sequence similarity; putative.
       0.686
rnj
Conserved hypothetical protein; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.
       0.654
MJ_0857
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0857.
       0.603
MJ_0531
Conserved hypothetical protein; Similar to SP:P42297 PID:603780 PID:849027 GB:AL009126 percent identity: 37.76; identified by sequence similarity; putative; Belongs to the universal stress protein A family.
   
    0.482
fni
Carotenoid biosynthetic gene ERWCRTS isolog; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.426
MJ_1162
Conserved hypothetical protein; Identified by sequence similarity; putative.
       0.423
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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