Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
MJ_0904Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0904. (195 aa)    
Predicted Functional Partners:
MJ_0903
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0903.
      0.927
MJ_0906
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0906.
     
 0.878
MJ_0905
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0905.
     
 0.871
MJ_0900
Type II secretion system protein; Identified by sequence similarity; putative; Belongs to the GSP E family.
  
    0.603
flaG
Flagella-related protein G, putative; Similar to GP:2104779 percent identity: 46.67; identified by sequence similarity; putative.
  
    0.561
flaF
Conserved hypothetical protein; Similar to GP:1707777 percent identity: 31.67; identified by sequence similarity; putative.
  
    0.539
flaJ
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 28.40; identified by sequence similarity; putative; To M.jannaschii MJ1286.
  
  
 0.509
flaK
Hypothetical protein; Cleaves the N-terminal leader peptide from preflagellins.
       0.464
trmY
Conserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
   
    0.449
MJ_1288
Type II secretion system protein; Similar to GP:1707774 percent identity: 29.44; identified by sequence similarity; putative; Belongs to the GSP E family.
   
    0.448
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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