STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_0920GTP-binding protein homologue (yphC); Similar to PID:1146219 SP:P50743 GB:AL009126 percent identity: 26.99; identified by sequence similarity; putative. (185 aa)    
Predicted Functional Partners:
MJ_0919
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0919.
  
    0.955
rpl40e
LSU ribosomal protein L40E (CEP52); Similar to PIR:B48470 percent identity: 61.11; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.896
MJ_1156
Cell division control protein 48 (cdc48), AAA family; Similar to GB:X79560 SP:P46464 PID:517390 percent identity: 57.53; identified by sequence similarity; putative; Belongs to the AAA ATPase family. CDC48 subfamily.
   
 0.881
MJ_0215
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0215; To M.jannaschii MJECL20.
  
 0.864
MJ_0104
DNA-binding protein, probably DNA helicase; Similar to GB:M64979 GB:L14754 GB:L24544 SP:P38935 PID:401776 percent identity: 34.98; identified by sequence similarity; putative; Belongs to the DNA2/NAM7 helicase family.
  
 0.852
MJ_0912
Conserved hypothetical protein; Similar to GP:1788638 percent identity: 31.17; identified by sequence similarity; putative.
  
 0.852
rps11
SSU ribosomal protein S11P (rpsK); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 0.830
MJ_0211
UDP-glucose 4-epimerase (galE); Involved in the metabolism of galactose. Catalyzes the conversion of UDP-galactose (UDP-Gal) to UDP-glucose (UDP-Glc) through a mechanism involving the transient reduction of NAD (By similarity). Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 0.819
MJ_1055
Capsular polysaccharide biosynthesis protein I; Similar to GB:U10927 SP:P39858 PID:506705 percent identity: 50.32; identified by sequence similarity; putative; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.819
atpE
H+-transporting ATP synthase, subunit E (atpE); Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.816
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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