Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
patSCopper transporting P type ATPase (copA); Most probably acts as a phosphatase in the cytosol; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. (273 aa)    
Predicted Functional Partners:
MJ_1242
Methyl coenzyme M reductase system, component A2 (atwA); Similar to GB:L11748 PID:293151 PID:385924 GB:AE000666 percent identity: 60.26; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.676
MJ_0498
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 38.41; identified by sequence similarity; putative.
       0.673
MJ_1412
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 37.85; identified by sequence similarity; putative; Belongs to the UPF0288 family.
       0.673
MJ_0404
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 65.03; identified by sequence similarity; putative.
       0.672
MJ_0800
(R)-2-hydroxyglutaryl-CoA dehydratase activator; Similar to SP:P11568 GB:X59645 PID:433932 percent identity: 31.78; identified by sequence similarity; putative.
       0.672
MJ_0094
Methyl coenzyme M reductase II, operon protein C (mtrC); Similar to GB:M16893 SP:P07960 PID:150057 percent identity: 31.15; identified by sequence similarity; putative.
       0.671
MJ_0802
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 32.96; identified by sequence similarity; putative.
       0.671
MJ_0967
Intracellular protease (pfpI); Similar to PID:1373331 percent identity: 33.77; identified by sequence similarity; putative; Belongs to the peptidase C56 family.
 
     0.618
MJ_1226
Plasma membrane ATPase 1 (aha1); Similar to SP:P20649 percent identity: 44.42; identified by sequence similarity; putative; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily.
  
     0.408
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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