STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1071Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1071; To M.jannaschii MJ0977 C-terminal region. (313 aa)    
Predicted Functional Partners:
MJ_1070
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1070.
       0.948
MJ_1072
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1072.
       0.714
MJ_0248
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0248.
   
 
 0.707
tgtA
Queuine tRNA-ribosyltransferase (tgtA); Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs. Can also utilize guanine as substrate.
  
    0.673
MJ_1068
Polysaccharide biosynthesis protein (capF) isolog; Similar to GB:U10927 SP:P39855 PID:506702 percent identity: 21.66; identified by sequence similarity; putative.
  
  
 0.553
MJ_1069
Galactosyltransferase isolog; Similar to GP:1486283 percent identity: 26.38; identified by sequence similarity; putative; Belongs to the glycosyltransferase group 1 family. Glycosyltransferase 4 subfamily.
     
 0.535
MJ_1061
Capsular polysaccharide biosynthesis protein D; Similar to GB:U10927 SP:P39853 PID:506700 percent identity: 51.04; identified by sequence similarity; putative; Belongs to the polysaccharide synthase family.
     
 0.526
polB
DNA polymerase delta small subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity); Belongs to the DNA polymerase delta/II small subunit family.
    
 
 0.516
MJ_1066
Spore coat polysaccharide biosynthesis protein C (spsC); Similar to GB:X73124 SP:P39623 PID:413989 GB:AL009126 percent identity: 54.97; identified by sequence similarity; putative.
       0.514
MJ_1064
Galactoside acetyltransferase (lacA); Similar to GB:J01636 SP:P07464 GB:X51872 PID:551814 PID:581122 percent identity: 46.92; identified by sequence similarity; putative; Belongs to the transferase hexapeptide repeat family.
       0.509
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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