STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livGHigh-affinity branched-chain amino acid transport ATP-binding protein (braF); Probable component of a branched-chain amino-acid transport system; Belongs to the ABC transporter superfamily. (257 aa)    
Predicted Functional Partners:
livH
High-affinity branched-chain amino acid transport protein (braD); Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
 
 
 0.999
livM
High-affinity branched-chain amino acid transport protein (braE); Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
 
 0.999
MJ_1266
High-affinity branched-chain amino acid transport protein (braC); Similar to GB:D90223 SP:P21175 GB:M31071 PID:151110 PID:216863 percent identity: 24.92; identified by sequence similarity; putative.
 
 
 0.998
livF
High-affinity branched-chain amino acid transport ATP-binding protein (braG); Probable component of a branched-chain amino-acid transport system.
 
 
0.998
tmk
Thymidylate kinase (tmk); Similar to SP:P36590 percent identity: 31.18; identified by sequence similarity; putative.
  
    0.464
rpl2
LSU ribosomal protein L2P (rplB); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
    0.401
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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