STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1292Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1292. (552 aa)    
Predicted Functional Partners:
MJ_1292.1
Hypothetical protein; Brute Force ORF; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1292.1.
      0.933
MJ_1293
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1293.
      0.911
MJ_1288
Type II secretion system protein; Similar to GP:1707774 percent identity: 29.44; identified by sequence similarity; putative; Belongs to the GSP E family.
  
    0.639
MJ_1287
Type II secretion system protein, putative; Similar to GP:1707774 percent identity: 37.88; identified by sequence similarity; putative; Belongs to the GSP E family.
  
    0.532
MJ_1291
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1291.
       0.501
MJ_1288.1
Hypothetical protein; Brute Force ORF; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1288.1.
       0.492
MJ_1289
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1289.
       0.492
MJ_1290
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1290.
       0.492
MJ_1284
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1284; To B.burgdorferi BB0465 N-terminal region.
       0.457
MJ_1285
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1285.
       0.457
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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