Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1305Hypothetical protein; Brute force ORF; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1305; Belongs to the M.jannaschii MJ0126/MJ0128/MJ0141/MJ0435/MJ0604/MJ1215/MJ1217/MJ1305/MJ1379 family. (147 aa)    
Predicted Functional Partners:
MJ_1304
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 41.82; identified by sequence similarity; putative.
   
   0.801
MJ_1302
Photosystem I iron-sulfur center 1 isolog; Identified by sequence similarity; putative.
       0.779
MJ_1303
Polyferredoxin (mvhB); Similar to GB:J04540 PID:149734 GB:AE000666 percent identity: 39.45; identified by sequence similarity; putative.
       0.773
MJ_1306
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 36.23; identified by sequence similarity; putative.
       0.757
MJ_1307
Conserved hypothetical protein; Similar to GP:1652336 percent identity: 36.73; identified by sequence similarity; putative.
 
     0.739
MJ_1308
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1308.
       0.699
MJ_1301
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1301; Belongs to the archaeal ATPase family.
       0.697
MJ_1309
Carbon monoxide dehydrogenase, hydrogenase anchor subunit CooM (cooM); Similar to GP:1515466 percent identity: 31.71; identified by sequence similarity; putative.
       0.670
MJ_1548
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 57.45; identified by sequence similarity; putative; Belongs to the UPF0331 family. MJ1548 subfamily.
   
 
 0.669
MJ_1310
Conserved hypothetical protein; Similar to GP:1652328 percent identity: 34.65; identified by sequence similarity; putative.
 
     0.625
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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