STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1351Glutamate synthase (gltB); Similar to GB:M18747 SP:P09831 GB:L20253 GB:M33743 GB:M68876 percent identity: 40.46; identified by sequence similarity; putative; Belongs to the glutamate synthase family. (510 aa)    
Predicted Functional Partners:
MJ_1350
Formylmethanofuran dehydrogenase, subunt C (tungsten); Similar to GB:AE000782 percent identity: 46.59; identified by sequence similarity; putative; Belongs to the FwdC/FmdC family.
 
    0.970
glnA
Glutamine synthetase (glnA); Probably involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. Beta-glutamate is a much poorer substrate than alpha-glutamate.
  
  
 0.918
MJ_0609
Amino acid transporter; Similar to GB:X77502 GB:X92657 PID:1890309 PID:608675 percent identity: 21.96; identified by sequence similarity; putative.
  
  
 0.895
fwdC
Formylmethanofuran dehydrogenase, subunit C (tungsten) (fwdC); Catalyzes the reversible oxidation of CO(2) and methanofuran (MFR) to N-formylmethanofuran (CHO-MFR). This enzyme is oxygen-labile. Belongs to the FwdC/FmdC family.
 
 
 0.880
MJ_0658
Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ0658; To M.thermoautotrophicum MTH238.
 
 
 0.865
MJ_1349
Coenzyme F420-reducing hydrogenase, beta subunit; Similar to GB:X61201 PID:809731 SP:Q00391 percent identity: 35.74; identified by sequence similarity; putative; Belongs to the FrhB family.
  
  
 0.836
rpl14
LSU ribosomal protein L14P (rplN); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.773
trpB
Tryptophan synthase beta subunit (trpB); The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
  
 0.742
ptr2
Transcriptional regulatory protein, AsnC family; Participates in positive as well as negative regulation of transcription. Binds to its own promoter.
     
 0.721
tfb
Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
    
   0.715
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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