STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1389Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1389. (134 aa)    
Predicted Functional Partners:
MJ_1339
Protein with ATP/GTP-binding site; Similar to SP:P04766 GB:X04399 PID:39954 percent identity: 32.65; identified by sequence similarity; putative; To M.thermoautotrophicum MTH765.
  
 
 0.937
MJ_0715
H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase-related protein (hmd); Similar to PID:1149527 SP:Q50840 percent identity: 29.86; identified by sequence similarity; putative; Belongs to the HMD family.
  
    0.517
MJ_1338
H(2)-dependent methylenetetrahydromethanopterin dehydrogenase related protein; Similar to SP:P32440 GB:U19363 GB:U19364 GB:X59547 PID:48909 percent identity: 29.09; identified by sequence similarity; putative; Belongs to the HMD family.
  
    0.517
rpoI
DNA-directed RNA polymerase, subunit I (rpoI); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.459
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.