STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1396Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1396. (2894 aa)    
Predicted Functional Partners:
MJ_0687
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 40.25; identified by sequence similarity; putative.
 
  
 0.688
MJ_1397
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1397.
       0.611
MJ_1395
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 47.15; identified by sequence similarity; putative.
       0.505
MJ_1156
Cell division control protein 48 (cdc48), AAA family; Similar to GB:X79560 SP:P46464 PID:517390 percent identity: 57.53; identified by sequence similarity; putative; Belongs to the AAA ATPase family. CDC48 subfamily.
     
 0.469
MJ_0421
Conserved hypothetical protein; Similar to GP:1786625 percent identity: 35.10; identified by sequence similarity; putative.
 
     0.466
smc
Chromosome segretation protein (smc1); Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.456
MJ_1468
Surface antigen; Similar to PID:1213023 percent identity: 32.90; identified by sequence similarity; putative.
 
  
 0.434
MJ_1266
High-affinity branched-chain amino acid transport protein (braC); Similar to GB:D90223 SP:P21175 GB:M31071 PID:151110 PID:216863 percent identity: 24.92; identified by sequence similarity; putative.
 
  
 0.411
MJ_0086
Unspecified methyltransferase; Similar to PIR:S21265 percent identity: 25.50; identified by sequence similarity; putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.
 
     0.406
MJ_1553
Transcriptional regulatory protein, arsR family; Similar to SP:P37309 GB:X80057 PID:466638 PID:510825 GB:U00096 percent identity: 32.31; identified by sequence similarity; putative.
 
  
 0.400
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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