STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1485TRK system potassium uptake protein (trkG); Similar to SP:P23849 GB:X56783 PID:43140 GB:U00096 PID:1742227 percent identity: 28.23; identified by sequence similarity; putative. (474 aa)    
Predicted Functional Partners:
trkA
TRK system potassium uptake protein (trkA); Part of a potassium transport system.
 
 
 0.990
pgk2
2-phosphoglycerate kinase (2pgk); Similar to GB:X70785 PID:467751 percent identity: 47.02; identified by sequence similarity; putative.
       0.785
MJ_1484
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1484.
       0.774
MJ_1483
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1483.
       0.773
MJ_1481
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 36.90; identified by sequence similarity; putative.
       0.743
MJ_1480
Conserved hypothetical protein; Similar to GP:1653730 percent identity: 47.10; identified by sequence similarity; putative.
       0.724
map
Methionyl aminopeptidase (map); Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.
       0.685
MJ_1479.1
Hypothetical protein; Brute Force ORF; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1479.1.
       0.531
coaBC
Pantothenate metabolism flavoprotein (dfp); Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'- phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'- phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
   
 
 0.446
MJ_0104
DNA-binding protein, probably DNA helicase; Similar to GB:M64979 GB:L14754 GB:L24544 SP:P38935 PID:401776 percent identity: 34.98; identified by sequence similarity; putative; Belongs to the DNA2/NAM7 helicase family.
   
 
 0.439
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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