STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1485TRK system potassium uptake protein (trkG); Similar to SP:P23849 GB:X56783 PID:43140 GB:U00096 PID:1742227 percent identity: 28.23; identified by sequence similarity; putative. (474 aa)    
Predicted Functional Partners:
trkA
TRK system potassium uptake protein (trkA); Part of a potassium transport system.
 
 
 0.994
pgk2
2-phosphoglycerate kinase (2pgk); Similar to GB:X70785 PID:467751 percent identity: 47.02; identified by sequence similarity; putative.
       0.790
MJ_1484
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1484.
       0.778
MJ_1483
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1483.
       0.773
MJ_1481
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 36.90; identified by sequence similarity; putative.
       0.744
MJ_1480
Conserved hypothetical protein; Similar to GP:1653730 percent identity: 47.10; identified by sequence similarity; putative.
       0.725
MJ_1275
NA(+)/H(+) antiporter (napA); This is probably a Na(+)/H(+) antiporter; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
  
 
 0.620
trm4
Proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family; Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.545
MJ_1479.1
Hypothetical protein; Brute Force ORF; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1479.1.
       0.531
MJ_1536
Thioredoxin reductase (trxB); Similar to GB:U02197 GB:L43967 SP:P47348 PID:1045780 percent identity: 38.93; identified by sequence similarity; putative.
     
 0.504
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.