STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1488Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1488. (393 aa)    
Predicted Functional Partners:
MJ_1487
Conserved hypothetical protein; Similar to GP:1653565 percent identity: 32.68; identified by sequence similarity; putative.
  
  
 0.799
MJ_0279
4-hydroxybenzoate octaprenyltransferase (ubiA); Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
  
  
 0.783
MJ_1489
Cell division control protein 47 (cdc47); Similar to SP:P38132 percent identity: 35.23; identified by sequence similarity; putative; Belongs to the MCM family.
 
  
 0.781
idsA
Bifunctional short chain isoprenyl diphosphate synthase (idsA); Similar to PID:913252 SP:Q53479 percent identity: 48.47; identified by sequence similarity; putative.
  
  
 0.767
MJ_1255
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1255; Belongs to the glycosyltransferase 28 family.
 
   
 0.611
MJ_0911
Magnesium-chelatase subunit (chlI); Similar to SP:P48101 percent identity: 54.69; identified by sequence similarity; putative; Belongs to the Mg-chelatase subunits D/I family.
  
  
 0.600
MJ_0416
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0416.
  
     0.554
fni
Carotenoid biosynthetic gene ERWCRTS isolog; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.549
MJ_1032
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 34.62; identified by sequence similarity; putative.
 
     0.526
purT
Phosphoribosylglycinamide formyltransferase 2 (purT); Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.522
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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