STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wecBLipopolysaccharide biosynthesis protein (wbpI); Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) to produce UDP-N-acetylmannosamine (UDP- ManNAc), the activated donor of ManNAc residues; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (366 aa)    
Predicted Functional Partners:
wecC
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Catalyzes the four-electron oxidation of UDP-N-acetyl-D- mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N- acetylmannosaminuronic acid (UDP-ManNAcA).
 
 
 0.999
MJ_1066
Spore coat polysaccharide biosynthesis protein C (spsC); Similar to GB:X73124 SP:P39623 PID:413989 GB:AL009126 percent identity: 54.97; identified by sequence similarity; putative.
  
  
 0.918
rnz
Conserved hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.891
MJ_0978
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ0978; To M.jannaschii MJ1086 N-terminal region.
      
 0.878
MJ_1503
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 39.29; identified by sequence similarity; putative.
       0.860
MJ_1063
Spore coat polysaccharide biosynthesis protein F (spsF); Similar to GB:X73124 SP:P39626 PID:413992 GB:AL009126 percent identity: 38.94; identified by sequence similarity; putative.
  
  
 0.847
MJ_1113
N-acetylglucosamine-1-phosphate transferase; Similar to GB:D28748 SP:P39465 PID:506372 percent identity: 28.00; identified by sequence similarity; putative.
  
  
 0.839
MJ_1065
Spore coat polysaccharide biosynthesis protein E; Similar to GB:X73124 SP:P39625 PID:413991 GB:AL009126 percent identity: 37.83; identified by sequence similarity; putative; To B.subtilis SpsE.
  
  
 0.808
MJ_1061
Capsular polysaccharide biosynthesis protein D; Similar to GB:U10927 SP:P39853 PID:506700 percent identity: 51.04; identified by sequence similarity; putative; Belongs to the polysaccharide synthase family.
  
  
 0.778
MJ_1505
ATP dependent RNA helicase, putative; Similar to GB:Z47047 SP:P40562 PID:557851 PID:763347 percent identity: 31.59; identified by sequence similarity; putative.
       0.778
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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