STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1563Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1563; Belongs to the GbsR family. (152 aa)    
Predicted Functional Partners:
MJ_1562
Hypothetical protein; Invalid gene; identified by GeneMark; putative; M. jannaschii predicted coding region MJ1562.
       0.951
MJ_1561
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1561.
       0.788
MJ_1641
Repressor protein; Similar to GB:L10328 SP:P07656 GB:K01992 GB:X02723 PID:145415 percent identity: 25.00; identified by sequence similarity; putative.
     
 0.722
MJ_1560
Multidrug-efflux transporter (bmr1); Similar to GB:L25604 SP:P33449 GB:M33768 PID:142606 PID:409287 percent identity: 28.57; identified by sequence similarity; putative.
       0.578
MJ_1450
Conserved hypothetical protein; Similar to GB:AE000666 percent identity: 37.27; identified by sequence similarity; putative.
     
 0.491
carS
Conserved hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.431
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.