STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1657Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1657; Belongs to the peptidase U32 family. (332 aa)    
Predicted Functional Partners:
MJ_1658
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1658.
       0.948
sepS
phenylalanyl-tRNA synthase alpha subunit; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
 
    0.832
MJ_1659
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1659; Belongs to the archaeal ATPase family.
       0.774
MJ_1302
Photosystem I iron-sulfur center 1 isolog; Identified by sequence similarity; putative.
  
 
 0.688
MJ_0880
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 26.24; identified by sequence similarity; putative.
  
     0.629
MJ_1656
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE); Similar to SP:P37352 GB:X75028 GB:Z37980 PID:402576 PID:757826 percent identity: 40.11; identified by sequence similarity; putative; Belongs to the FAH family.
       0.617
pcm
L-isoaspartyl protein carboxyl methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (By similarity).
  
   0.517
serS
seryl-tRNA synthetase (serS); Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
     0.514
MJ_0804
Pyruvate formate-lyase activating enzyme (act); Similar to GB:L42023 SP:P43751 PID:1003258 PID:1222095 PID:1204435 percent identity: 29.66; identified by sequence similarity; putative.
 
  
 0.478
MJ_1556
Conserved hypothetical protein; Similar to GB:AE000782 percent identity: 22.15; identified by sequence similarity; putative.
  
     0.413
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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