STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MJ_1659Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1659; Belongs to the archaeal ATPase family. (361 aa)    
Predicted Functional Partners:
MJ_1657
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1657; Belongs to the peptidase U32 family.
       0.778
MJ_1658
Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1658.
       0.778
sepS
phenylalanyl-tRNA synthase alpha subunit; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
       0.778
MJ_1656
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE); Similar to SP:P37352 GB:X75028 GB:Z37980 PID:402576 PID:757826 percent identity: 40.11; identified by sequence similarity; putative; Belongs to the FAH family.
       0.609
Your Current Organism:
Methanocaldococcus jannaschii
NCBI taxonomy Id: 243232
Other names: M. jannaschii DSM 2661, Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii str. DSM 2661, Methanococcus jannaschii DSM 2661
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