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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0061General secretion pathway protein A; Identified by similarity to SP:P45754; match to protein family HMM PF01471. (549 aa)    
Predicted Functional Partners:
MCA0060
Putative general secretion pathway protein B; Identified by similarity to OMNI:VC2444.
 
     0.939
cyoE
Protoheme IX farnesyl transferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.512
MCA1174
Conserved hypothetical protein; Identified by similarity to OMNI:VC0935.
 
     0.504
MCA0058
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by similarity to SP:Q59601; match to protein family HMM PF01553.
       0.463
MCA0059
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04351.
       0.463
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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