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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0088Hypothetical protein; Identified by Glimmer2; putative. (182 aa)    
Predicted Functional Partners:
pilE
Type 4 fimbrial biogenesis protein PilE; Identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.697
MCA0087
Conserved domain protein.
       0.697
MCA0089
Pilin-like protein; Identified by similarity to GP:17429699.
       0.689
MCA0090
Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.
       0.610
MCA0091
Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.610
rlmM
Conserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.472
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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