Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA0140Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535. (244 aa)    
Predicted Functional Partners:
MCA1435
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
   
 0.627
MCA1433
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.585
MCA0619
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
   
 0.536
MCA1204
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.469
MCA1432
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.453
metK-1
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.451
MCA0141
Conserved hypothetical protein; Identified by similarity to GP:17430491; match to protein family HMM PF01161; match to protein family HMM TIGR00481.
       0.445
MCA2546
Conserved domain protein; Identified by similarity to OMNI:NTL01AP01225.
  
     0.410
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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