STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0147Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397. (464 aa)    
Predicted Functional Partners:
MCA1178
Putative exopolysaccharide export protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to SP:Q45409.
 
  
 0.987
MCA0148
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
 
  
 0.983
MCA1429
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.981
MCA0150
Conserved domain protein.
 
  
 0.974
MCA2033
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.967
MCA0149
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.965
MCA1175
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.964
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.962
MCA1430
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q45407; match to protein family HMM PF02563.
 
  
 0.925
MCA2107
Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.918
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (22%) [HD]