Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
MCA0148Putative capsular polysaccharide export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563. (277 aa)    
Predicted Functional Partners:
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
  
 0.983
MCA0149
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
 
 0.977
MCA1178
Putative exopolysaccharide export protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to SP:Q45409.
 
 
 0.968
MCA1429
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
 
 0.951
MCA0150
Conserved domain protein.
 
 
 0.947
MCA1430
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q45407; match to protein family HMM PF02563.
  
  
 
0.926
MCA1176
Putative exopolysaccharide export protein, interruption-N; This gene is interrupted by an IS element; identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706.
 
 
 0.829
MCA0152
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.715
MCA0154
Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:VC0925; match to protein family HMM PF00534.
 
  
 0.628
MCA1173
Putative membrane protein; Identified by similarity to OMNI:VC0931; match to protein family HMM PF04932.
 
  
 0.584
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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