Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA0150Conserved domain protein. (289 aa)    
Predicted Functional Partners:
MCA0149
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
 0.993
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
  
 0.974
MCA1176
Putative exopolysaccharide export protein, interruption-N; This gene is interrupted by an IS element; identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706.
  
 0.970
MCA0148
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
 
 
 0.947
MCA1179
Putative capsular polysaccharide biosynthesis protein; Identified by similarity to GP:12006001.
  
 0.917
MCA1175
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
 
 0.827
nuoCD
NADH dehydrogenase I, C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
     
 0.792
MCA0152
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    0.727
MCA1430
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q45407; match to protein family HMM PF02563.
 
 
 0.720
MCA0154
Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:VC0925; match to protein family HMM PF00534.
 
    0.665
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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