MCA0163 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA0163

Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125. (228 aa)

Predicted Functional Partners:

MCA0165

0.997

MCA0166

0.997

MCA0162

0.992

MCA0161

0.987

MCA0164

0.794

MCA0769

0.747

MCA2116

0.505

MCA0160

0.477

MCA0208

0.439

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MCA0160	MCA0161	Hypothetical protein; Identified by Glimmer2; putative.	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	0.568
MCA0160	MCA0162	Hypothetical protein; Identified by Glimmer2; putative.	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	0.477
MCA0160	MCA0163	Hypothetical protein; Identified by Glimmer2; putative.	Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125.	0.477
MCA0160	MCA0164	Hypothetical protein; Identified by Glimmer2; putative.	Nickel-iron hydrogenase, accessory protein; Identified by similarity to GP:19421553; match to protein family HMM PF04955.	0.474
MCA0160	MCA0165	Hypothetical protein; Identified by Glimmer2; putative.	Nickel-iron hydrogenase, large subunit; Identified by similarity to SP:P18636; match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.409
MCA0161	MCA0160	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Hypothetical protein; Identified by Glimmer2; putative.	0.568
MCA0161	MCA0162	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	0.962
MCA0161	MCA0163	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125.	0.987
MCA0161	MCA0164	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Nickel-iron hydrogenase, accessory protein; Identified by similarity to GP:19421553; match to protein family HMM PF04955.	0.741
MCA0161	MCA0165	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Nickel-iron hydrogenase, large subunit; Identified by similarity to SP:P18636; match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.945
MCA0161	MCA0166	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:P21950; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.	0.958
MCA0161	MCA0208	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.	0.591
MCA0161	MCA0769	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.	0.521
MCA0161	MCA2116	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.	0.645
MCA0162	MCA0160	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Hypothetical protein; Identified by Glimmer2; putative.	0.477
MCA0162	MCA0161	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Putative hydrogenase expression/formation protein; Identified by similarity to SP:P19932; match to protein family HMM PF04809.	0.962
MCA0162	MCA0163	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:Q43953; match to protein family HMM PF01292; match to protein family HMM TIGR02125.	0.992
MCA0162	MCA0164	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Nickel-iron hydrogenase, accessory protein; Identified by similarity to GP:19421553; match to protein family HMM PF04955.	0.805
MCA0162	MCA0165	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Nickel-iron hydrogenase, large subunit; Identified by similarity to SP:P18636; match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.963
MCA0162	MCA0166	Hydrogenase expression/formation protein; Identified by similarity to SP:Q03004; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141.	Nickel-iron hydrogenase, small subunit; Identified by similarity to SP:P21950; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.	0.957

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About