STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0171Putative lipoprotein; Identified by similarity to GP:17427325. (172 aa)    
Predicted Functional Partners:
MCA0172
Mce family protein; Identified by similarity to GP:17427324; match to protein family HMM PF02470.
 
   0.963
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
 
  
 0.946
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
 
    0.943
MCA0170
Fatty acid desaturase family protein; Identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487.
       0.714
MCA0175
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
MCA2777
Conserved hypothetical protein; Identified by similarity to GP:17427348.
  
     0.543
MCA0956
Hydroxylamine oxydoreductase; Identified by similarity to SP:Q50925.
  
     0.420
MCA0132
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00112.
  
     0.413
MCA2890
Conserved hypothetical protein; Identified by similarity to GP:9949974; match to protein family HMM PF07721.
  
     0.406
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.