STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0172Mce family protein; Identified by similarity to GP:17427324; match to protein family HMM PF02470. (304 aa)    
Predicted Functional Partners:
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
 
 0.997
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
 
 0.997
MCA0171
Putative lipoprotein; Identified by similarity to GP:17427325.
 
   0.963
MCA1968
Conserved hypothetical protein TIGR00056; Identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
  
 0.954
MCA1969
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
  
 0.949
MCA1967
Conserved hypothetical protein; Identified by similarity to GP:4336800; match to protein family HMM PF02470.
     
 0.905
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
  
 0.883
MCA2792
Conserved hypothetical protein; Identified by similarity to OMNI:CC3693; match to protein family HMM PF05494.
  
 0.883
MCA1966
STAS domain protein; Identified by match to protein family HMM PF01740.
  
 0.856
MCA0170
Fatty acid desaturase family protein; Identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487.
 
     0.748
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.