Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0175Hypothetical protein; Identified by Glimmer2; putative. (51 aa)    
Predicted Functional Partners:
MCA0171
Putative lipoprotein; Identified by similarity to GP:17427325.
       0.565
MCA0172
Mce family protein; Identified by similarity to GP:17427324; match to protein family HMM PF02470.
       0.565
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
       0.565
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
       0.565
MCA0170
Fatty acid desaturase family protein; Identified by similarity to OMNI:NTL03PA00287; match to protein family HMM PF00487.
       0.525
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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