STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0178Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1056 aa)    
Predicted Functional Partners:
MCA0177
Conserved hypothetical protein; Identified by similarity to GP:17432073; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   0.982
MCA0176
Outer membrane efflux protein; Identified by similarity to GP:17431587; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
   0.951
MCA1721
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.836
MCA1190
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.566
MCA2153
Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.521
MCA0179
Hypothetical protein; Identified by Glimmer2; putative.
       0.506
MCA0979
Putative transporter; Identified by similarity to SP:P77239; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.501
MCA2719
Putative heavy metal efflux system protein; Identified by similarity to SP:P37973; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.490
MCA1936
Putative transporter; Identified by similarity to SP:P94176; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.484
MCA0491
Conserved hypothetical protein; Identified by similarity to GP:4378852.
  
     0.483
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.