STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0187Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00894; match to protein family HMM PF01522. (314 aa)    
Predicted Functional Partners:
rsmI
Conserved hypothetical protein TIGR00096; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.697
MCA0184
Conserved hypothetical protein TIGR00252; Identified by similarity to GP:17430288; match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
 
    0.602
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
     
 0.520
MCA0185
Putative lipoprotein; Identified by similarity to OMNI:NTL03PA04424; match to protein family HMM PF04348.
       0.515
MCA0181
Hypothetical protein; Identified by Glimmer2; putative.
       0.493
MCA0182
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
       0.493
MCA1434
Identified by similarity to GP:15024655; match to protein family HMM PF00535.
 
  
 0.461
MCA1508
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.458
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
   
 0.453
MCA2126
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.426
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.