Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA0210Putative nifZ protein. (89 aa)    
Predicted Functional Partners:
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.936
MCA0208
Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.
 
     0.934
MCA0209
nifZ protein; Identified by similarity to SP:P08533; match to protein family HMM PF04319.
 
   
 0.925
MCA0218
Conserved hypothetical protein; Identified by similarity to GP:7407093.
 
    0.890
MCA0214
Conserved hypothetical protein; Identified by similarity to GP:551688.
 
     0.871
MCA0216
Putative ferredoxin, 2Fe-2S; Identified by similarity to SP:P25528; match to protein family HMM PF00111.
 
     0.854
MCA0213
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988.
 
     0.850
MCA0206
Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
 
     0.785
MCA0261
Conserved hypothetical protein; Identified by similarity to OMNI:TM1186.
  
     0.774
MCA0228
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.773
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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