MCA0213 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA0213

Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988. (72 aa)

Predicted Functional Partners:

MCA0218

0.966

MCA0209

0.913

MCA0208

0.869

MCA0204

0.866

nifW

0.866

MCA0207

0.856

MCA0235

0.855

MCA0210

0.851

MCA0214

0.845

MCA0236

0.835

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0204	MCA0207	MCA0204	MCA0207	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	0.781
MCA0204	MCA0208	MCA0204	MCA0208	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.	0.786
MCA0204	MCA0209	MCA0204	MCA0209	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	nifZ protein; Identified by similarity to SP:P08533; match to protein family HMM PF04319.	0.899
MCA0204	MCA0210	MCA0204	MCA0210	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Putative nifZ protein.	0.656
MCA0204	MCA0213	MCA0204	MCA0213	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988.	0.866
MCA0204	MCA0214	MCA0204	MCA0214	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Conserved hypothetical protein; Identified by similarity to GP:551688.	0.576
MCA0204	MCA0218	MCA0204	MCA0218	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Conserved hypothetical protein; Identified by similarity to GP:7407093.	0.794
MCA0204	MCA0235	MCA0204	MCA0235	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Nitrogenase molybdenum-iron protein NifX; Identified by similarity to SP:P19078; match to protein family HMM PF02579.	0.851
MCA0204	MCA0236	MCA0204	MCA0236	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Conserved hypothetical protein; Identified by similarity to GP:12620458; match to protein family HMM PF03270.	0.782
MCA0204	nifW	MCA0204	MCA0255	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.	0.822
MCA0207	MCA0204	MCA0207	MCA0204	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Nitrogenase cofactor biosynthesis protein NifB; Identified by similarity to SP:P27714; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290.	0.781
MCA0207	MCA0208	MCA0207	MCA0208	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.	0.949
MCA0207	MCA0209	MCA0207	MCA0209	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	nifZ protein; Identified by similarity to SP:P08533; match to protein family HMM PF04319.	0.933
MCA0207	MCA0210	MCA0207	MCA0210	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative nifZ protein.	0.938
MCA0207	MCA0213	MCA0207	MCA0213	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988.	0.856
MCA0207	MCA0214	MCA0207	MCA0214	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to GP:551688.	0.885
MCA0207	MCA0218	MCA0207	MCA0218	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to GP:7407093.	0.879
MCA0207	MCA0235	MCA0207	MCA0235	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Nitrogenase molybdenum-iron protein NifX; Identified by similarity to SP:P19078; match to protein family HMM PF02579.	0.712
MCA0207	MCA0236	MCA0207	MCA0236	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Conserved hypothetical protein; Identified by similarity to GP:12620458; match to protein family HMM PF03270.	0.759
MCA0207	nifW	MCA0207	MCA0255	Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.	Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.	0.786

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About