STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0218Conserved hypothetical protein; Identified by similarity to GP:7407093. (280 aa)    
Predicted Functional Partners:
MCA0213
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML4553; match to protein family HMM PF06988.
 
    0.966
MCA0214
Conserved hypothetical protein; Identified by similarity to GP:551688.
 
     0.918
MCA0209
nifZ protein; Identified by similarity to SP:P08533; match to protein family HMM PF04319.
 
    0.896
MCA0210
Putative nifZ protein.
 
    0.892
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.879
MCA0208
Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.
 
    0.877
MCA0216
Putative ferredoxin, 2Fe-2S; Identified by similarity to SP:P25528; match to protein family HMM PF00111.
 
     0.867
MCA0215
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.844
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
    0.816
MCA0236
Conserved hypothetical protein; Identified by similarity to GP:12620458; match to protein family HMM PF03270.
 
    0.809
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.