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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA0228Response regulator; Identified by match to protein family HMM PF00072. (141 aa)    
Predicted Functional Partners:
MCA0210
Putative nifZ protein.
  
     0.773
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.771
MCA0225
Rieske 2Fe-2S family protein; Identified by similarity to GP:1754625; match to protein family HMM PF00355.
  
     0.764
MCA0261
Conserved hypothetical protein; Identified by similarity to OMNI:TM1186.
  
     0.746
MCA0214
Conserved hypothetical protein; Identified by similarity to GP:551688.
  
     0.738
MCA2837
Amine oxidase family, flavin-containing protein.
  
     0.729
MCA0218
Conserved hypothetical protein; Identified by similarity to GP:7407093.
  
     0.709
MCA0208
Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816.
  
     0.703
MCA0257
Conserved hypothetical protein; Identified by similarity to GP:17131609.
  
     0.694
MCA0216
Putative ferredoxin, 2Fe-2S; Identified by similarity to SP:P25528; match to protein family HMM PF00111.
  
     0.682
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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