Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
MCA0306Putative spore coat protein, late developmental; Identified by similarity to SP:P27755; match to protein family HMM PF05229. (181 aa)    
Predicted Functional Partners:
MCA0305
Putative chaperone protein pmfD; Identified by similarity to SP:P53520.
 
 0.998
MCA0304
Fimbrial biogenesis protein; Identified by similarity to SP:P30130; match to protein family HMM PF00577.
 
 
 0.991
MCA0303
Putative lipoprotein; Identified by match to protein family HMM PF05229.
 
  
0.974
MCA2512
Acid phosphatase; Identified by similarity to GP:7650481; match to protein family HMM PF04185.
  
   
 0.659
pilE
Type 4 fimbrial biogenesis protein PilE; Identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
      
 0.618
MCA0087
Conserved domain protein.
      
 0.618
MCA0090
Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.
      
 0.618
MCA0091
Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
      
 0.618
MCA0155
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA0553
Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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