Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0338Cytochrome c5530 family protein; Identified by similarity to GP:4325062. (969 aa)    
Predicted Functional Partners:
MCA2590
Putative cytochrome c peroxidase family protein.
  
   
 0.775
MCA2224
PKD domain protein; Identified by match to protein family HMM PF00801.
  
   
 0.755
MCA2410
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.716
MCA2574
Conserved hypothetical protein; Identified by similarity to GP:12698380.
  
     0.702
MCA0994
Conserved hypothetical protein; Identified by similarity to GP:17428164.
  
     0.674
MCA1827
Conserved hypothetical protein; Identified by similarity to GP:12698380.
  
     0.658
MCA0875
Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family.
  
  
 0.624
MCA2704
Serine protease, subtilase family; Identified by match to protein family HMM PF00082.
  
  
 0.624
MCA1915
Cation-transporting ATPase, E1-E2 family; Identified by match to protein family HMM PF00122.
  
     0.623
MCA3099
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.621
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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