Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0346Hypothetical protein; Identified by Glimmer2; putative. (439 aa)    
Predicted Functional Partners:
MCA2718
Conserved hypothetical protein; Identified by similarity to GP:1785478.
  
     0.658
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.630
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.625
MCA0180
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
pmoC3
Methane monooxygenase, C subunit; Identified by similarity to GP:14456716; match to protein family HMM PF04896.
      
 0.618
MCA2963
Conserved domain protein; Identified by similarity to SP:P48837.
      
 0.618
MCA3022
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
oadC
Oxaloacetate decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
  
     0.605
MCA0744
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04460; match to protein family HMM PF06835.
  
     0.584
MCA0527
Putative membrane protein; Identified by match to protein family HMM PF02517.
  
     0.555
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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