Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA0368Zinc-binding domain protein; Identified by match to protein family HMM PF00246. (363 aa)    
Predicted Functional Partners:
MCA0369
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
 
   0.957
MCA0365
Conserved hypothetical protein; Identified by similarity to GP:15808730.
 
     0.551
MCA1752
Conserved domain protein; Identified by similarity to SP:Q8YM40; match to protein family HMM PF01835.
  
 
  0.548
MCA0367
BNR repeat domain protein; Identified by match to protein family HMM PF02012.
       0.534
MCA1806
Putative fatty acid cis/trans isomerase; Identified by similarity to GP:5257178; match to protein family HMM PF06934.
  
     0.456
MCA2410
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.450
MCA1585
Putative fatty acid cis/trans isomerase; Identified by similarity to GP:5257178; match to protein family HMM PF06934.
  
     0.433
MCA2409
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.425
MCA3097
Conserved hypothetical protein; Identified by similarity to OMNI:VC2455.
  
     0.403
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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